David Coomes research.
Showing posts with label announcement. Show all posts
Showing posts with label announcement. Show all posts
Wednesday, June 19, 2013
David Coomes promoted to Reader
David Baulcombe is pleased to announce that David Coomes has been promoted to Reader.
Congratulations to David for this well deserved recognition of his excellent
contributions in research, teaching and generally to the University.
David Coomes research.
David Coomes research.
Monday, June 10, 2013
Fractal patterns in colonies of E.coli
Tim Rudge and Fernan Federici have been noticed by Scientific American for their images of bacterial growth patterns. Their paper was recently published in ACS Synthetic
Biology, showing how complex fractal patterns in colonies of E. coli emerge simply from the physical interactions of rod shaped cells.
http://blogs.scientificamerican.com/oscillator/2013/06/09/fractal-bacteria/
http://blogs.scientificamerican.com/lab-rat/2013/06/09/the-fractal-patterns-of-bacterial-colonies/
http://blogs.scientificamerican.com/oscillator/2013/06/09/fractal-bacteria/
http://blogs.scientificamerican.com/lab-rat/2013/06/09/the-fractal-patterns-of-bacterial-colonies/
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Thursday, May 30, 2013
Ash dieback, caused by the Chalara fungus, prompts re-evaluation of current protocols to protect UK trees and other plants
Taskforce recommends threats to plant health be taken as seriously as animal disease
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| Prof. Chris Gilligan |
As
the fungus responsible for ash dieback continues to devastate ash tree
populations throughout the UK and other threats to the countryside continue to
emerge, experts convened by Defra are advocating for stronger measures to
protect the UK’s trees and plants.
The
independent Tree Health and Plant Biosecurity Expert Taskforce, chaired by
Professor Chris Gilligan, was established late last year to address the current
and emerging threats to the UK’s trees and plants. Working with an advisory
group made up of various stakeholder organisations, to include industry, Defra,
and the Forestry Commission as well as Border Force, the taskforce is proposing
a number of initiatives aimed at minimising the risk of plant pests and
diseases.
Professor
Chris Gilligan, chair of the taskforce and Professor of Mathematical Biology
and Head of the School of Biological Sciences at the University of Cambridge,
said: “The UK needs to be better prepared for threats to plant health. In the
last few years alone, several previously unknown pests and pathogens have
emerged, posing significant risks to the UK’s crops as well as trees in
woodlands, commercial forests and in urban environments.
“By
increasing our understanding of what pests and diseases are the biggest threats
and how best to mitigate their impact, we can minimise potentially devastating
outbreaks.”
The
task force scientists believe that the threats have increased because of
globalisation in trade and travel and the subsequent escalation in volume and
diversity of plants and plant products entering the UK, all of which
potentially harbour plant pests and pathogens. Once established, pests and
pathogens can wreak havoc on biodiversity, timber and crop production, the
landscape and, in certain circumstances, human health. (In addition to Chalara,
recent examples include horse chestnut leaf mining moth, oak processionary
moth, bleeding canker of horse chestnut and Dothistroma needle blight on
pines.)
Although
the remit was to focus on trees and related woody species, the taskforce noted
that many of the principles addressed in recommendations for tree health are
applicable to pests and diseases that affect other plants (including
agricultural, horticultural and biomass crops, indigenous vegetation and
ornamental plants).
Taskforce recommendations
Currently,
there are numerous risk assessments for individual pests and pathogens at both
the national and European level. The taskforce recommends a single national
Risk Register for plant health. This new UK Plant Health Risk Register would
serve to identify and prioritise pests and pathogens that pose a threat to the
UK and to identify what actions must be taken should the threat
materialise.
The
taskforce is also advocating an individual at a senior level who is responsible
for overseeing the UK Plant Health Risk Register and providing leadership for
managing those risks. The Chief Plant Health Officer would work in a similar
fashion as the Chief Veterinary Officer, who oversees animal-related
emergencies.
The
appointee would also be responsible for developing and implementing procedures
for preparedness and contingency planning to predict, monitor and control the
spread of pests and pathogens. There was also a recommendation that current
governance and legislation needed to be reviewed, simplified and strengthened.
Because
of globalisation, more and more people and goods are travelling greater
distances at an increasingly greater rate. As a result, there is a significant
increase in the risk of introducing non-native pests and pathogens. In order to
minimise the risks of introduction at the border, the taskforce has made
several recommendations regarding the import of trees and other plants. They
propose that no plant material for personal use be imported from outside the
EU.
The
import of live plants, foliage, branches and other plant parts has seen a 71
per cent increase since 1999, dramatically increasing the risk a pathogen or
pest might be introduced. Therefore they also propose the Plant Passport
scheme, which currently only applies to some plants associated with pests and
pathogens, be strengthened and also applied to seeds as a means of ensuring
traceability (showing all ports of calls within the EU and last port before
entry to the EU).
Additional
recommendations include improving the use of epidemiological intelligence from
EU/other regions and work to improve the EU regulations concerned with tree
health and plant biosecurity, developing a modern, user-friendly, system to
provide quick and intelligent access to information about tree health and plant
biosecurity, and addressing key skills shortages.
Tuesday, May 28, 2013
New lecturer appointed
Dr Andrew Tanentzap has been appointed to a
Lectureship in the Department and will take up his new post in October.
Andrew is currently a Banting Fellow at York University in Canada and
also conducts research for Landcare Research in New Zealand. He studied
for his PhD at Cambridge, supervised by Dr David Coomes.
Thursday, February 14, 2013
2013 Portrait unveiling
Monday, October 15, 2012
BBSRC Doctoral Training Partnership Programme
The BBSRC Doctoral Training Partnership Programme started on 1st October 2012. The programme, developed following an award of £5.6M from the BBSRC, will have at least 60 students over the next three years. The programme, which sits in the Graduate School of Life Sciences, involves a number of partners (Babraham Institute, Wellcome Trust Sanger Institute, European Bioinformatics Institute, National Institute for Agricultural Botany and the Animal Health Trust) as well as 15 Departments and Institutes in the Schools of Biological Sciences, Clinical Medicine, Physical Sciences and Technology.
The Programme's Director, Professor Sir David Baulcombe, hosted a welcome dinner at St Catharine's College on 3rd October 2012.
Monday, May 14, 2012
First scholar on new Rwandan scholarship scheme
This term sees the arrival in Cambridge of Celestin Ukozehasi, who has been selected as the first recipient of the Rwanda Cambridge Scholarship. He will be studying for a PhD in Plant Sciences, and will be a member of Wolfson College.
More information...
More information...
Wednesday, February 29, 2012
Professor B.A. Abeywickrema
We have been informed by Rohan H. Wickramasinghe of the passing away in May 2011 of Emeritus Professor B.A. Abeywickrema, who was a member of Clare College and earned
his Ph.D. from the Department of Botany in 1946. Professor Abeywickrema had
a distinguished career in the academic world in Sri Lanka and was much
respected by all who knew him.
Obituaries in The Island newspaper:
by Dr Rohan H. Wickramasinghe
by Dr U Pethiyagoda
his Ph.D. from the Department of Botany in 1946. Professor Abeywickrema had
a distinguished career in the academic world in Sri Lanka and was much
respected by all who knew him.
Obituaries in The Island newspaper:
by Dr Rohan H. Wickramasinghe
by Dr U Pethiyagoda
Wednesday, February 8, 2012
Neil Dalchau awarded 2011 Tansley Medal

The 2011 Tansley Medal has been awarded to Neil Dalchau from Microsoft Research, Cambridge. Neil has made important discoveries that provide invaluable insights into the regulation of the circadian clock in Arabidopsis thaliana using a combination of mathematical modeling and experimental intervention. Most revealing among these has been the demonstration that components of the circadian clock are sensitive to sucrose and that the GIGANTIA gene is essential for its perception (Dalchau et al., 2011).
Neil was a graduate student in the Signal Transduction Group with Dr Alex Webb.
Read more.
Thursday, January 19, 2012
Doug Bailey
I’m sorry to have to tell you that Doug Bailey died peacefully at his home on Monday (16th Jan) after a long battle with cancer. Doug was a Director of Research at INRA and was seconded as an INRA Visiting Fellow to work in the Department in the Epidemiology & Modelling Group.
Those who knew Doug well will remember him as a kind and generous colleague. He was an accomplished researcher with a remarkable ability to communicate the excitement and value of epidemiological research to experimenters, theoreticians, farmers and regulators. Others in the Department may not know much about Doug’s background and his contributions to research and I add an all too brief summary below. We shall miss him dearly.
Doug began his career in the University as a technical assistant in my group in the Dept of Applied Biology, transferring to Botany/Plant Sciences in 1989. He had previously worked at the Plant Breeding Institute and before that as a tractor driver for Pemberton Farms. Doug was an accomplished and much sought-after footballer with opportunities to play for major clubs but he decided instead to concentrate on a career in science, reading for a part-time degree at Anglia, from which he graduated with a first. This was followed by a part-time PhD with the Open University while continuing to work in the Epidemiology Group. Doug then completed several successful postdoc positions with us before being head-hunted by INRA to establish epidemiological programmes first on vine diseases in Bordeaux and then on soil-borne diseases in Rennes.
Doug was a remarkable experimenter with the rare gift of understanding how to interface experimentation with mathematical models in order to gain insight into the mechanisms of how diseases spread and to test that insight rigorously in both microcosms and in extensive field experiments. Doug produced seminal work on the roles of primary and secondary infection in the spread of disease. He pioneered research on disease-induced host growth, in which he showed how low levels of infection stimulate plants to over-compensate for infection by producing more leaves or roots that act as ‘stepping-stones’ to favour disease spread. He also carried out a series of elegant experiments on scaling from individual to population behaviour in epidemics. These experiments led to the first successful experimental test of percolation theory to predict disease invasion. Doug’s microcosm experiments in which he could study not only epidemiological mechanisms but the variability amongst replicate epidemics also led to new insights into how to improve the effectiveness of biological control of soil-borne pathogens by exploiting knowledge of the mechanisms and potential for variability. Doug’s research on primary and secondary infection in take-all of wheat was adopted by the Home Grown Cereals to explain the much–studied phenomenon of take-all decline in cereals, with related work impacting on sugar-beet diseases.
Doug’s work, matched with his enthusiasm and ever-friendly and helpful support, have endeared him to many and left a lasting legacy in laboratories here and in France and amongst many colleagues around the world.
Chris Gilligan
Those who knew Doug well will remember him as a kind and generous colleague. He was an accomplished researcher with a remarkable ability to communicate the excitement and value of epidemiological research to experimenters, theoreticians, farmers and regulators. Others in the Department may not know much about Doug’s background and his contributions to research and I add an all too brief summary below. We shall miss him dearly.
Doug began his career in the University as a technical assistant in my group in the Dept of Applied Biology, transferring to Botany/Plant Sciences in 1989. He had previously worked at the Plant Breeding Institute and before that as a tractor driver for Pemberton Farms. Doug was an accomplished and much sought-after footballer with opportunities to play for major clubs but he decided instead to concentrate on a career in science, reading for a part-time degree at Anglia, from which he graduated with a first. This was followed by a part-time PhD with the Open University while continuing to work in the Epidemiology Group. Doug then completed several successful postdoc positions with us before being head-hunted by INRA to establish epidemiological programmes first on vine diseases in Bordeaux and then on soil-borne diseases in Rennes.
Doug was a remarkable experimenter with the rare gift of understanding how to interface experimentation with mathematical models in order to gain insight into the mechanisms of how diseases spread and to test that insight rigorously in both microcosms and in extensive field experiments. Doug produced seminal work on the roles of primary and secondary infection in the spread of disease. He pioneered research on disease-induced host growth, in which he showed how low levels of infection stimulate plants to over-compensate for infection by producing more leaves or roots that act as ‘stepping-stones’ to favour disease spread. He also carried out a series of elegant experiments on scaling from individual to population behaviour in epidemics. These experiments led to the first successful experimental test of percolation theory to predict disease invasion. Doug’s microcosm experiments in which he could study not only epidemiological mechanisms but the variability amongst replicate epidemics also led to new insights into how to improve the effectiveness of biological control of soil-borne pathogens by exploiting knowledge of the mechanisms and potential for variability. Doug’s research on primary and secondary infection in take-all of wheat was adopted by the Home Grown Cereals to explain the much–studied phenomenon of take-all decline in cereals, with related work impacting on sugar-beet diseases.
Doug’s work, matched with his enthusiasm and ever-friendly and helpful support, have endeared him to many and left a lasting legacy in laboratories here and in France and amongst many colleagues around the world.
Chris Gilligan
Tuesday, March 29, 2011
Cambridge Scientists win major component of $4 Million joint funding initiative

Cambridge Scientists win major component of $4 Million joint funding initiative funded jointly by BBSRC (UK) and NSF (US)
Plants really matter, and for the next generation, plant and microbial productivity will become the focus of key global issues: the basis for feeding an additional 2-3 billion mouths, to drive forward an economy currently trading on past sunlight, and maintain biodiversity in the face of climate change. The enzymatic powerhouse at the heart of these processes takes carbon dioxide from the atmosphere and uses light energy to produce sugars and other building blocks of life. This enzyme, called Rubisco, is rather flawed and somewhat promiscuous: it engages with oxygen as well as carbon dioxide, to the detriment of potential plant productivity. Some plants have evolved mechanisms, which act like biological turbochargers, to concentrate CO2 around Rubisco and improve the enzyme’s operating efficiency. These carbon concentrating mechanisms have evolved in certain key crops, such as sugar cane and maize. Other plants, such as aquatic algae, have developed mechanism in parallel which actively concentrate bicarbonate as a source of CO2 for Rubisco.
An $8 million collaborative funding opportunity was recently offered by the UK BBSRC and the US NSF, with the challenge of surpassing these known pathways of carbon fixation, and maximising plant yield for the future. Selected scientists were pitched together to develop international consortia to develop novel ideas, prompted and guided by a scientific mentors and administrators. Four proposals were invited to be taken forward for development and funding, two of which involve scientists in the Department of Plant Sciences at the University of Cambridge. The Ideas Lab experience was likened by Prof Griffiths to be a combination of Big Brother, The Weakest Link and The Apprentice! Prof. Griffiths is the consortium leader for one of the joint proposals funded, which will be exploring the operation of an algal carbon concentrating mechanism, and the possibility for introducing components into higher plant cells. Dr Julian Hibberd is part of another consortium also supported by the BBSRC/NSF initiative, seeking to increase the efficiency of light harvesting by broadening the wavelengths of light, as used by bacteria, to power biophysical transport processes in higher plants.
This research support will consolidate a major Plant Sciences initiative at Cambridge, which is exploring the means to improve photosynthesis from the perspective of sustainable plant productivity and crop yields for the future. Additional work is also being undertaken by Dr Hibberd, investigating the potential introduction of C4 photosynthetic traits into crops such as rice. This programme is part of a broader sweep of strategic research relevant to sustainable crop development, involving RNAi, pathogen suppression and epidemiological controls to maintain yields in a changing climate.
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Thursday, January 27, 2011
Peter Barham, 1926-2011

I am sorry to announce the recent death of Peter Barham on Sunday 23 January 2011. Peter started work at 14 years of age in the then Botany School in 1941 in the Plant Physiology section. After a period of National Service Peter graduated to Senior Technician. In 1965 together with Tom ap Rees Peter was instrumental in organizing the first Biology of Cells practicals which were held in the Elementary Lab (Teaching Lab) before being transferred to Zoology. In his time in Plant Physiology Peter trained many technicians, three of whom have remained in the department for the last forty years.
In 1971 Peter was promoted to Chief Technician, a post he held until his retirement in 1989. Peter’s funeral will be held at the Cambridge Crematorium West Chapel at 11-15AM on Friday 4th February 2011.
Glyn Jones
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